Detailed information of SNP:
|
SNP ID:
sf1123144938(Gbrowse)
Chromosome: chr11 Position: 23144938 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 63.06% | 36.94% |
| All Indica | 796 | 56.53% | 43.47% |
| All Japonica | 495 | 69.90% | 30.10% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 211 | 40.28% | 59.72% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 333 | 69.97% | 30.03% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123144938 | C->G | LOC_Os11g39640(LOC_Os11g39640.1) | Synonymous |