Detailed information of SNP:
|
SNP ID:
sf1123161636(Gbrowse)
Chromosome: chr11 Position: 23161636 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.07% | 34.93% |
| All Indica | 797 | 51.57% | 48.43% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 50.53% | 49.47% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123161636 | T->C | INTERGENIC | None |