Detailed information of SNP:
|
SNP ID:
sf1123172722(Gbrowse)
Chromosome: chr11 Position: 23172722 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 76.67% | 23.33% |
| All Indica | 760 | 93.29% | 6.71% |
| All Japonica | 496 | 50.81% | 49.19% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 363 | 93.66% | 6.34% |
| Indica II | 193 | 91.19% | 8.81% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123172722 | T->C | INTERGENIC | None |