Detailed information of SNP:
|
SNP ID:
sf1123173955(Gbrowse)
Chromosome: chr11 Position: 23173955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 83.27% | 16.73% |
| All Indica | 781 | 71.96% | 28.04% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 73.51% | 26.49% |
| Indica II | 207 | 62.80% | 37.20% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123173955 | G->A | INTERGENIC | None |