Detailed information of SNP:
|
SNP ID:
sf1123204348(Gbrowse)
Chromosome: chr11 Position: 23204348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.43% | 6.57% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 493 | 89.25% | 10.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123204348 | C->T | INTERGENIC | None |