Detailed information of SNP:
|
SNP ID:
sf1123208085(Gbrowse)
Chromosome: chr11 Position: 23208085 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.48% | 31.52% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 496 | 36.90% | 63.10% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 29.25% | 70.75% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123208085 | G->A | INTERGENIC | None |