Detailed information of SNP:
|
SNP ID:
sf1123211657(Gbrowse)
Chromosome: chr11 Position: 23211657 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 76.50% | 23.50% |
| All Indica | 794 | 60.33% | 39.67% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 68.90% | 31.10% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123211657 | G->C | LOC_Os11g39730(LOC_Os11g39730.1) | Synonymous |