Detailed information of SNP:
|
SNP ID:
sf1123227794(Gbrowse)
Chromosome: chr11 Position: 23227794 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 94.89% | 5.11% |
| All Indica | 733 | 94.82% | 5.18% |
| All Japonica | 481 | 96.05% | 3.95% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 324 | 91.05% | 8.95% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 199 | 97.49% | 2.51% |
| Temperate Japonica | 321 | 95.95% | 4.05% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123227794 | G->A | INTERGENIC | None |