Detailed information of SNP:
|
SNP ID:
sf1123234603(Gbrowse)
Chromosome: chr11 Position: 23234603 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 79.92% | 20.08% |
| All Indica | 794 | 68.51% | 31.49% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 56.76% | 43.24% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123234603 | C->T | INTERGENIC | None |