Detailed information of SNP:
|
SNP ID:
sf1123316679(Gbrowse)
Chromosome: chr11 Position: 23316679 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 90.65% | 9.35% |
| All Indica | 751 | 83.75% | 16.25% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 73.78% | 26.22% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123316679 | G->A | INTERGENIC | None |