Detailed information of SNP:
|
SNP ID:
sf1123342117(Gbrowse)
Chromosome: chr11 Position: 23342117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 74.22% | 25.78% |
| All Indica | 739 | 57.24% | 42.76% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 347 | 46.97% | 53.03% |
| Indica II | 194 | 68.56% | 31.44% |
| Indica Intermediate | 198 | 64.14% | 35.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123342117 | T->C | LOC_Os11g39950(LOC_Os11g39950.1) | Synonymous |