Detailed information of SNP:
|
SNP ID:
sf1123367874(Gbrowse)
Chromosome: chr11 Position: 23367874 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 95.44% | 4.56% |
| All Indica | 783 | 91.95% | 8.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 205 | 77.56% | 22.44% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123367874 | G->A | INTERGENIC | None |