Detailed information of SNP:
|
SNP ID:
sf1123371284(Gbrowse)
Chromosome: chr11 Position: 23371284 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 97.91% | 2.09% |
| All Indica | 779 | 97.30% | 2.70% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 199 | 94.47% | 5.53% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123371284 | C->A | LOC_Os11g39980(LOC_Os11g39980.1) | Synonymous |