Detailed information of SNP:



SNP ID: sf1123376417(Gbrowse)

Chromosome: chr11

Position: 23376417
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1326 54.60% 45.40%
All Indica732 84.56% 15.44%
All Japonica486 10.49% 89.51%
Aus52 53.85% 46.15%
Indica I326 90.49% 9.51%
Indica II205 89.76% 10.24%
Indica Intermediate201 69.65% 30.35%
Temperate Japonica333 6.91% 93.09%
Tropical Japonica90 6.67% 93.33%
Japonica Intermediate63 34.92% 65.08%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1123376417 A->G INTERGENIC None