Detailed information of SNP:
|
SNP ID:
sf1123376417(Gbrowse)
Chromosome: chr11 Position: 23376417 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 54.60% | 45.40% |
| All Indica | 732 | 84.56% | 15.44% |
| All Japonica | 486 | 10.49% | 89.51% |
| Aus | 52 | 53.85% | 46.15% |
| Indica I | 326 | 90.49% | 9.51% |
| Indica II | 205 | 89.76% | 10.24% |
| Indica Intermediate | 201 | 69.65% | 30.35% |
| Temperate Japonica | 333 | 6.91% | 93.09% |
| Tropical Japonica | 90 | 6.67% | 93.33% |
| Japonica Intermediate | 63 | 34.92% | 65.08% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123376417 | A->G | INTERGENIC | None |