Detailed information of SNP:



SNP ID: sf1123394550(Gbrowse)

Chromosome: chr11

Position: 23394550
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1358 94.85% 5.15%
All Indica738 91.33% 8.67%
All Japonica497 98.79% 1.21%
Aus67 100.00% 0.00%
Indica I348 89.08% 10.92%
Indica II208 95.19% 4.81%
Indica Intermediate182 91.21% 8.79%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1123394550 A->G LOC_Os11g40009(LOC_Os11g40009.2) UTR_3_PRIME
sf1123394550 A->G LOC_Os11g40009(LOC_Os11g40009.1) UTR_3_PRIME