Detailed information of SNP:
|
SNP ID:
sf1123417562(Gbrowse)
Chromosome: chr11 Position: 23417562 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 94.84% | 5.16% |
| All Indica | 742 | 91.78% | 8.22% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 91.78% | 8.22% |
| Indica II | 187 | 94.12% | 5.88% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123417562 | G->A | LOC_Os11g40060(LOC_Os11g40060.1) | Synonymous |