Detailed information of SNP:
|
SNP ID:
sf1123423159(Gbrowse)
Chromosome: chr11 Position: 23423159 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 93.64% | 6.36% |
| All Indica | 795 | 95.47% | 4.53% |
| All Japonica | 481 | 88.98% | 11.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 323 | 88.54% | 11.46% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123423159 | G->C | INTERGENIC | None |