Detailed information of SNP:
|
SNP ID:
sf1123434424(Gbrowse)
Chromosome: chr11 Position: 23434424 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 96.67% | 3.33% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123434424 | A->T | INTERGENIC | None |