Detailed information of SNP:
|
SNP ID:
sf1123450325(Gbrowse)
Chromosome: chr11 Position: 23450325 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 96.54% | 3.46% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123450325 | C->A | LOC_Os11g40100(LOC_Os11g40100.1) | INTRON |
| sf1123450325 | C->A | LOC_Os11g40100(LOC_Os11g40100.3) | INTRON |