Detailed information of SNP:



SNP ID: sf1123462724(Gbrowse)

Chromosome: chr11

Position: 23462724
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 84.20% 15.80%
All Indica798 98.62% 1.38%
All Japonica497 65.79% 34.21%
Aus67 62.69% 37.31%
Indica I375 98.93% 1.07%
Indica II212 98.58% 1.42%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 62.39% 37.61%
Tropical Japonica94 62.77% 37.23%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1123462724 A->G LOC_Os11g40110(LOC_Os11g40110.1) Synonymous