Detailed information of SNP:
|
SNP ID:
sf1123476592(Gbrowse)
Chromosome: chr11 Position: 23476592 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 75.25% | 24.75% |
| All Indica | 796 | 75.63% | 24.37% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123476592 | A->G | LOC_Os11g40150(LOC_Os11g40150.1) | UTR_5_PRIME |