Detailed information of SNP:
|
SNP ID:
sf1123491579(Gbrowse)
Chromosome: chr11 Position: 23491579 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 61.80% | 38.20% |
| All Indica | 790 | 82.91% | 17.09% |
| All Japonica | 478 | 31.38% | 68.62% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 208 | 72.60% | 27.40% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 321 | 28.35% | 71.65% |
| Tropical Japonica | 91 | 23.08% | 76.92% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123491579 | C->T | INTERGENIC | None |