Detailed information of SNP:
|
SNP ID:
sf1123524010(Gbrowse)
Chromosome: chr11 Position: 23524010 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.77% | 32.23% |
| All Indica | 796 | 78.02% | 21.98% |
| All Japonica | 497 | 55.13% | 44.87% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 76.20% | 23.80% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123524010 | A->G | INTERGENIC | None |