Detailed information of SNP:
|
SNP ID:
sf1123535711(Gbrowse)
Chromosome: chr11 Position: 23535711 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 74.36% | 25.64% |
| All Indica | 792 | 93.69% | 6.31% |
| All Japonica | 488 | 48.98% | 51.02% |
| Aus | 63 | 36.51% | 63.49% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 334 | 43.41% | 56.59% |
| Tropical Japonica | 88 | 47.73% | 52.27% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123535711 | C->A | LOC_Os11g40249(LOC_Os11g40249.4) | UTR_5_PRIME |
| sf1123535711 | C->A | LOC_Os11g40249(LOC_Os11g40249.1) | UTR_5_PRIME |
| sf1123535711 | C->A | LOC_Os11g40249(LOC_Os11g40249.2) | UTR_5_PRIME |
| sf1123535711 | C->A | LOC_Os11g40249(LOC_Os11g40249.3) | UTR_5_PRIME |