Detailed information of SNP:
|
SNP ID:
sf1123560084(Gbrowse)
Chromosome: chr11 Position: 23560084 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 95.03% | 4.97% |
| All Indica | 750 | 91.07% | 8.93% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 88.45% | 11.55% |
| Indica II | 198 | 92.42% | 7.58% |
| Indica Intermediate | 197 | 94.42% | 5.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123560084 | G->A | LOC_Os11g40284(LOC_Os11g40284.1) | UTR_3_PRIME |