Detailed information of SNP:
|
SNP ID:
sf1123560135(Gbrowse)
Chromosome: chr11 Position: 23560135 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 53.41% | 46.59% |
| All Indica | 749 | 77.04% | 22.96% |
| All Japonica | 456 | 13.82% | 86.18% |
| Aus | 62 | 50.00% | 50.00% |
| Indica I | 342 | 81.29% | 18.71% |
| Indica II | 209 | 75.60% | 24.40% |
| Indica Intermediate | 198 | 71.21% | 28.79% |
| Temperate Japonica | 312 | 9.94% | 90.06% |
| Tropical Japonica | 85 | 28.24% | 71.76% |
| Japonica Intermediate | 59 | 13.56% | 86.44% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123560135 | A->C | LOC_Os11g40284(LOC_Os11g40284.1) | UTR_3_PRIME |