Detailed information of SNP:
|
SNP ID:
sf1123562286(Gbrowse)
Chromosome: chr11 Position: 23562286 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 50.33% | 49.67% |
| All Indica | 772 | 26.04% | 73.96% |
| All Japonica | 478 | 90.17% | 9.83% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 361 | 21.05% | 78.95% |
| Indica II | 204 | 27.94% | 72.06% |
| Indica Intermediate | 207 | 32.85% | 67.15% |
| Temperate Japonica | 326 | 91.10% | 8.90% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123562286 | G->T | LOC_Os11g40300(LOC_Os11g40300.1) | Non-Synonymous SNP |