Detailed information of SNP:
|
SNP ID:
sf1123564997(Gbrowse)
Chromosome: chr11 Position: 23564997 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 55.79% | 44.21% |
| All Indica | 766 | 83.42% | 16.58% |
| All Japonica | 481 | 12.47% | 87.53% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 362 | 91.16% | 8.84% |
| Indica II | 204 | 76.47% | 23.53% |
| Indica Intermediate | 200 | 76.50% | 23.50% |
| Temperate Japonica | 329 | 12.16% | 87.84% |
| Tropical Japonica | 86 | 15.12% | 84.88% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123564997 | G->A | INTERGENIC | None |