Detailed information of SNP:
|
SNP ID:
sf1123566641(Gbrowse)
Chromosome: chr11 Position: 23566641 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 71.56% | 28.44% |
| All Indica | 770 | 94.16% | 5.84% |
| All Japonica | 452 | 34.51% | 65.49% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 358 | 93.58% | 6.42% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 309 | 28.80% | 71.20% |
| Tropical Japonica | 88 | 50.00% | 50.00% |
| Japonica Intermediate | 55 | 41.82% | 58.18% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123566641 | T->C | LOC_Os11g40315(LOC_Os11g40315.1) | UTR_5_PRIME |