Detailed information of SNP:
|
SNP ID:
sf1123577639(Gbrowse)
Chromosome: chr11 Position: 23577639 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 62.98% | 37.02% |
| All Indica | 753 | 42.90% | 57.10% |
| All Japonica | 496 | 91.73% | 8.27% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 346 | 50.29% | 49.71% |
| Indica II | 206 | 39.81% | 60.19% |
| Indica Intermediate | 201 | 33.33% | 66.67% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123577639 | A->G | INTERGENIC | None |