Detailed information of SNP:
|
SNP ID:
sf1123605916(Gbrowse)
Chromosome: chr11 Position: 23605916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 58.62% | 41.38% |
| All Indica | 789 | 38.53% | 61.47% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 369 | 34.42% | 65.58% |
| Indica II | 210 | 48.57% | 51.43% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123605916 | G->A | LOC_Os11g40380(LOC_Os11g40380.1) | Non-Synonymous SNP |