Detailed information of SNP:
|
SNP ID:
sf1123611888(Gbrowse)
Chromosome: chr11 Position: 23611888 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 76.18% | 23.82% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123611888 | C->T | LOC_Os11g40390(LOC_Os11g40390.1) | Non-Synonymous SNP |