Detailed information of SNP:
|
SNP ID:
sf1123612022(Gbrowse)
Chromosome: chr11 Position: 23612022 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 75.80% | 24.20% |
| All Indica | 793 | 89.79% | 10.21% |
| All Japonica | 497 | 56.74% | 43.26% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 372 | 87.10% | 12.90% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123612022 | A->G | LOC_Os11g40390(LOC_Os11g40390.1) | Synonymous |