Detailed information of SNP:
|
SNP ID:
sf1123612127(Gbrowse)
Chromosome: chr11 Position: 23612127 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 75.97% | 24.03% |
| All Indica | 793 | 89.91% | 10.09% |
| All Japonica | 495 | 56.77% | 43.23% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 50.30% | 49.70% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123612127 | A->G | LOC_Os11g40390(LOC_Os11g40390.1) | Synonymous |