Detailed information of SNP:
|
SNP ID:
sf1123612348(Gbrowse)
Chromosome: chr11 Position: 23612348 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.03% | 22.97% |
| All Indica | 795 | 91.32% | 8.68% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123612348 | A->G | LOC_Os11g40390(LOC_Os11g40390.1) | Non-Synonymous SNP |