Detailed information of SNP:
|
SNP ID:
sf1123612389(Gbrowse)
Chromosome: chr11 Position: 23612389 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 76.65% | 23.35% |
| All Indica | 785 | 91.08% | 8.92% |
| All Japonica | 497 | 56.94% | 43.06% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 369 | 88.35% | 11.65% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123612389 | C->T | LOC_Os11g40390(LOC_Os11g40390.1) | Non-Synonymous SNP |