Detailed information of SNP:
|
SNP ID:
sf1123612578(Gbrowse)
Chromosome: chr11 Position: 23612578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.26% | 8.74% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123612578 | C->T | LOC_Os11g40390(LOC_Os11g40390.1) | Non-Synonymous SNP |