Detailed information of SNP:
|
SNP ID:
sf1123633127(Gbrowse)
Chromosome: chr11 Position: 23633127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.26% | 14.74% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123633127 | C->T | LOC_Os11g40420(LOC_Os11g40420.1) | INTRON |