Detailed information of SNP:
|
SNP ID:
sf1123650052(Gbrowse)
Chromosome: chr11 Position: 23650052 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.98% | 12.02% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 496 | 77.42% | 22.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123650052 | C->T | LOC_Os11g40439(LOC_Os11g40439.1) | INTRON |