Detailed information of SNP:
|
SNP ID:
sf1123655894(Gbrowse)
Chromosome: chr11 Position: 23655894 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.70% | 18.30% |
| All Indica | 797 | 85.70% | 14.30% |
| All Japonica | 496 | 76.81% | 23.19% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123655894 | T->C | LOC_Os11g40450(LOC_Os11g40450.1) | Synonymous |