Detailed information of SNP:
|
SNP ID:
sf1123697192(Gbrowse)
Chromosome: chr11 Position: 23697192 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 72.61% | 27.39% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 492 | 26.22% | 73.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 15.57% | 84.43% |
| Tropical Japonica | 90 | 40.00% | 60.00% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123697192 | T->C | LOC_Os11g40490(LOC_Os11g40490.1) | INTRON |