Detailed information of SNP:
|
SNP ID:
sf1123712959(Gbrowse)
Chromosome: chr11 Position: 23712959 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.22% | 5.78% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123712959 | G->A | LOC_Os11g40520(LOC_Os11g40520.1) | INTRON |