Detailed information of SNP:
|
SNP ID:
sf1123712969(Gbrowse)
Chromosome: chr11 Position: 23712969 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.70% | 32.30% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 496 | 37.90% | 62.10% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 28.14% | 71.86% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123712969 | T->C | LOC_Os11g40520(LOC_Os11g40520.1) | INTRON |