Detailed information of SNP:
|
SNP ID:
sf1123713668(Gbrowse)
Chromosome: chr11 Position: 23713668 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.75% | 36.25% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123713668 | T->C | INTERGENIC | None |