Detailed information of SNP:
|
SNP ID:
sf1123715740(Gbrowse)
Chromosome: chr11 Position: 23715740 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.08% | 29.92% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 496 | 45.16% | 54.84% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 334 | 38.32% | 61.68% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123715740 | A->G | INTERGENIC | None |