Detailed information of SNP:
|
SNP ID:
sf1123754946(Gbrowse)
Chromosome: chr11 Position: 23754946 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.07% | 15.93% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 56.34% | 43.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 38.21% | 61.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123754946 | T->C | LOC_Os11g40590(LOC_Os11g40590.1) | Non-Synonymous SNP |
| sf1123754946 | T->C | LOC_Os11g40590(LOC_Os11g40590.2) | Non-Synonymous SNP |
| sf1123754946 | T->C | LOC_Os11g40590(LOC_Os11g40590.3) | Non-Synonymous SNP |