Detailed information of SNP:
|
SNP ID:
sf1123757722(Gbrowse)
Chromosome: chr11 Position: 23757722 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.87% | 34.13% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 38.23% | 61.77% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123757722 | A->G | LOC_Os11g40590(LOC_Os11g40590.1) | INTRON |
| sf1123757722 | A->G | LOC_Os11g40590(LOC_Os11g40590.2) | INTRON |
| sf1123757722 | A->G | LOC_Os11g40590(LOC_Os11g40590.3) | INTRON |