Detailed information of SNP:
|
SNP ID:
sf1123762925(Gbrowse)
Chromosome: chr11 Position: 23762925 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 72.57% | 27.43% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 466 | 24.25% | 75.75% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 329 | 16.41% | 83.59% |
| Tropical Japonica | 75 | 24.00% | 76.00% |
| Japonica Intermediate | 62 | 66.13% | 33.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123762925 | A->T | INTERGENIC | None |