Detailed information of SNP:
|
SNP ID:
sf1123780906(Gbrowse)
Chromosome: chr11 Position: 23780906 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 52.16% | 47.84% |
| All Indica | 799 | 71.84% | 28.16% |
| All Japonica | 493 | 23.73% | 76.27% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 334 | 20.96% | 79.04% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123780906 | T->G | INTERGENIC | None |