Detailed information of SNP:
|
SNP ID:
sf1123810567(Gbrowse)
Chromosome: chr11 Position: 23810567 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 81.62% | 18.38% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 482 | 48.55% | 51.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 329 | 28.88% | 71.12% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123810567 | T->C | INTERGENIC | None |